4u3t

X-ray diffraction
2.2Å resolution

Crystal structure of the transpeptidase domain of Neisseria gonorrhoeae penicillin-binding protein 2 derived from the penicillin-resistant strain 6140

Released:

Function and Biology Details

Reaction catalysed:
Preferential cleavage: (Ac)(2)-L-Lys-D-Ala-|-D-Ala. Also transpeptidation of peptidyl-alanyl moieties that are N-acyl substituents of D-alanine.
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-139932 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Probable peptidoglycan D,D-transpeptidase PenA Chains: A, B
Molecule details ›
Chains: A, B
Length: 330 amino acids
Theoretical weight: 35.41 KDa
Source organism: Neisseria gonorrhoeae FA6140
Expression system: Escherichia coli
UniProt:
  • Canonical: P08149 (Residues: 237-345, 346-574; Coverage: 56%)
Gene name: penA
Sequence domains: Penicillin binding protein transpeptidase domain
Structure domains: DD-peptidase/beta-lactamase superfamily

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P21
Unit cell:
a: 44.5Å b: 77.4Å c: 88Å
α: 90° β: 92.5° γ: 90°
R-values:
R R work R free
0.195 0.193 0.243
Expression system: Escherichia coli