4u61

X-ray diffraction
1.65Å resolution

Trichodysplasia spinulosa-associated polyomavirus (TSPyV) VP1 in complex with 6'-sialyllactose

Released:
Model geometry
Fit model/data

Function and Biology Details

Structure analysis Details

Assembly composition:
homo pentamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-122821 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Capsid protein VP1 Chains: A, B, C, D, E, F, G, H, I, J
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J
Length: 280 amino acids
Theoretical weight: 30.99 KDa
Source organism: Trichodysplasia spinulosa-associated polyomavirus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: E2ESL7 (Residues: 31-304; Coverage: 73%)
Gene name: VP1
Sequence domains: Polyomavirus coat protein
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

Carbohydrate polymer : NEW Components: SIA, GAL
2 bound ligands:
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P212121
Unit cell:
a: 139.56Å b: 146.35Å c: 151.54Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.166 0.165 0.184
Expression system: Escherichia coli BL21(DE3)