› 4uar

X-ray diffraction
1.9Å resolution

Crystal structure of apo-CbbY from Rhodobacter sphaeroides

Released:
DOI: 10.2210/pdb4uar/pdb
PDB entry 4uar coloured by chain, front view.
PDB entry 4uar coloured by chain, side view.
PDB entry 4uar coloured by chain, top view.
Source organism: Cereibacter sphaeroides
Primary publication:
Degradation of potent Rubisco inhibitor by selective sugar phosphatase.
Bracher A, Sharma A, Starling-Windhof A, Hartl FU, Hayer-Hartl M
Nat Plants 1 14002 (2015)
PMID: 27246049

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-161171 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein CbbY Chain: A
Molecule details ›
Chain: A
Length: 230 amino acids
Theoretical weight: 25.15 KDa
Source organism: Cereibacter sphaeroides
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P95649 (Residues: 1-230; Coverage: 100%)
Gene name: cbbY
Sequence domains: haloacid dehalogenase-like hydrolase
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: I4
Unit cell:
a: 117.685Å b: 117.685Å c: 43.994Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.2 0.199 0.224
Expression system: Escherichia coli BL21(DE3)

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Citations

7 review citations

Biogenesis and Metabolic Maintenance of Rubisco.
Bracher et al. (2017)
6 more

1 mention without citation

Conformational & spectroscopic characterization, charge analysis and molecular docking profiles of chromone-3-carboxylic acid using a quantum hybrid computational method.
Jayasheela et al. (2020)