› 4uml

X-ray diffraction
1.9Å resolution

Crystal structure of ganglioside induced differentiation associated protein 2 (GDAP2) macro domain

Released:
DOI: 10.2210/pdb4uml/pdb
PDB entry 4uml coloured by chain, front view.
PDB entry 4uml coloured by chain, side view.
PDB entry 4uml coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Elkins JM, Wang J, Kopec J, Wang D, Strain-Damerell C, Shrestha L, Sieg C, Tallant C, Newman JA, von Delft F, Bountra C, Edwards A, Knapp S

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192685 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ganglioside-induced differentiation-associated protein 2 Chain: A
Molecule details ›
Chain: A
Length: 229 amino acids
Theoretical weight: 25.53 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q9NXN4 (Residues: 1-228; Coverage: 46%)
Gene name: GDAP2
Sequence domains: Macro domain
Structure domains: Leucine Aminopeptidase, subunit E, domain 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P43212
Unit cell:
a: 70.84Å b: 70.84Å c: 97.549Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.198 0.196 0.231
Expression system: Spodoptera frugiperda

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