› 4uzj

X-ray diffraction
2.4Å resolution

STRUCTURE OF THE WNT DEACYLASE NOTUM FROM DROSOPHILA - CRYSTAL FORM I - 2.4A

Released:
DOI: 10.2210/pdb4uzj/pdb
PDB entry 4uzj coloured by chain, front view.
PDB entry 4uzj coloured by chain, side view.
PDB entry 4uzj coloured by chain, top view.
Source organism: Drosophila melanogaster
Primary publication:
Notum deacylates Wnt proteins to suppress signalling activity.
Kakugawa S, Langton PF, Zebisch M, Howell S, Chang TH, Liu Y, Feizi T, Bineva G, O'Reilly N, Snijders AP, Jones EY, Vincent JP
Nature 519 187-192 (2015)
PMID: 25731175

Function and Biology Details

Reaction catalysed: 
[Wnt]-O-(9Z)-hexadec-9-enoyl-L-serine + H(2)O = [Wnt]-L-serine + (9Z)-hexadec-9-enoate
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-194312 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Palmitoleoyl-protein carboxylesterase NOTUM Chains: A, B
Molecule details ›
Chains: A, B
Length: 372 amino acids
Theoretical weight: 42.44 KDa
Source organism: Drosophila melanogaster
Expression system: Homo sapiens
UniProt:
  • Canonical: Q9VUX3 (Residues: 86-415, 598-617; Coverage: 56%)
Gene names: CG13076, Notum, wf
Sequence domains: Pectinacetylesterase

Ligands and Environments

1 bound ligand:
Ligand NAG 1 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P21
Unit cell:
a: 59.388Å b: 81.394Å c: 86.945Å
α: 90° β: 105.54° γ: 90°
R-values:
R R work R free
0.198 0.197 0.243
Expression system: Homo sapiens

Quick links

Citations

70 review citations

Wnt/β-Catenin Signaling, Disease, and Emerging Therapeutic Modalities.
Nusse et al. (2017)
69 more

2 mentions without citation

Notum deacylates Wnt proteins to suppress signalling activity.
Kakugawa et al. (2015)
1 more