› 4w98

X-ray diffraction
1.43Å resolution

Acinetobacter baumannii SDF NDK

Released:
DOI: 10.2210/pdb4w98/pdb
PDB entry 4w98 coloured by chain, front view.
PDB entry 4w98 coloured by chain, side view.
PDB entry 4w98 coloured by chain, top view.
Source organism: Acinetobacter baumannii SDF
Primary publication:
Structural and Functional Characterization of Acinetobacter baumannii Nucleoside Diphosphate Kinase
Hu Y, Feng F, Liu Y
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Jin Zhan 42 260-267 (2015)

Function and Biology Details

Reaction catalysed: 
ATP + nucleoside diphosphate = ADP + nucleoside triphosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109248 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleoside diphosphate kinase Chain: A
Molecule details ›
Chain: A
Length: 145 amino acids
Theoretical weight: 15.76 KDa
Source organism: Acinetobacter baumannii SDF
Expression system: Escherichia coli
UniProt:
  • Canonical: B0VKS3 (Residues: 1-143; Coverage: 100%)
Gene names: ABSDF3006, ndk
Sequence domains: Nucleoside diphosphate kinase
Structure domains: Nucleoside diphosphate kinase-like domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: I222
Unit cell:
a: 61.726Å b: 76.962Å c: 82.239Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.164 0.163 0.189
Expression system: Escherichia coli

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