4wzb

X-ray diffraction
2.3Å resolution

Crystal Structure of MgAMPPCP-bound Av2-Av1 complex

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero octamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132541 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Nitrogenase molybdenum-iron protein alpha chain Chains: A, C
Molecule details ›
Chains: A, C
Length: 477 amino acids
Theoretical weight: 54 KDa
Source organism: Azotobacter vinelandii
UniProt:
  • Canonical: P07328 (Residues: 4-480; Coverage: 97%)
Gene name: nifD
Sequence domains: Nitrogenase component 1 type Oxidoreductase
Structure domains: Nitrogenase molybdenum iron protein domain
Nitrogenase molybdenum-iron protein beta chain Chains: B, D
Molecule details ›
Chains: B, D
Length: 522 amino acids
Theoretical weight: 59.4 KDa
Source organism: Azotobacter vinelandii
UniProt:
  • Canonical: P07329 (Residues: 2-523; Coverage: 100%)
Gene name: nifK
Sequence domains:
Structure domains:
Nitrogenase iron protein 1 Chains: E, F, G, H
Molecule details ›
Chains: E, F, G, H
Length: 272 amino acids
Theoretical weight: 29.56 KDa
Source organism: Azotobacter vinelandii
UniProt:
  • Canonical: P00459 (Residues: 2-273; Coverage: 94%)
Gene name: nifH1
Sequence domains: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
Structure domains: P-loop containing nucleotide triphosphate hydrolases

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.1
Spacegroup: P212121
Unit cell:
a: 110.533Å b: 120.894Å c: 264.834Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.207 0.204 0.255