4wzm

X-ray diffraction
2.52Å resolution

Mutant K18E of RNA dependent RNA polymerase from Foot-and-Mouth Disease Virus complexed with RNA

Released:

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
Autocatalytically cleaves itself from the polyprotein of the foot-and-mouth disease virus by hydrolysis of a Lys-|-Gly bond, but then cleaves host cell initiation factor eIF-4G at bonds -Gly-|-Arg- and -Lys-|-Arg-.
NTP + H(2)O = NDP + phosphate
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-136762 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct RNA molecules
Macromolecules (3 distinct):
RNA-directed RNA polymerase 3D-POL Chain: A
Molecule details ›
Chain: A
Length: 481 amino acids
Theoretical weight: 54.11 KDa
Source organism: Foot-and-mouth disease virus (strain C1-Santa Pau)
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P03311 (Residues: 1858-2327; Coverage: 20%)
Sequence domains: Viral RNA-dependent RNA polymerase
Structure domains:
RNA template Chain: B
Molecule details ›
Chain: B
Length: 8 nucleotides
Theoretical weight: 2.54 KDa
Source organism: synthetic construct
Expression system: Not provided
RNA primer Chain: C
Molecule details ›
Chain: C
Length: 7 nucleotides
Theoretical weight: 2.21 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: P3221
Unit cell:
a: 94.306Å b: 94.306Å c: 100.815Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.226 0.224 0.262
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided