› 4xav

X-ray diffraction
2.05Å resolution

Crystal structure of olfactomedin domain from gliomedin

Released:
DOI: 10.2210/pdb4xav/pdb
PDB entry 4xav coloured by chain, front view.
PDB entry 4xav coloured by chain, side view.
PDB entry 4xav coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
Molecular Details of Olfactomedin Domains Provide Pathway to Structure-Function Studies.
Hill SE, Donegan RK, Nguyen E, Desai TM, Lieberman RL
PLoS One 10 e0130888 (2015)
PMID: 26121352

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183890 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Gliomedin shedded ectodomain Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 271 amino acids
Theoretical weight: 30.91 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8BMF8 (Residues: 279-549; Coverage: 49%)
Gene names: Crgl2, Gldn
Sequence domains: Olfactomedin-like domain

Ligands and Environments

3 bound ligands:
Ligand GOL 3 x GOL
Ligand NA 4 x NA
Ligand PO4 8 x PO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P21
Unit cell:
a: 47.164Å b: 140.643Å c: 78.152Å
α: 90° β: 106.03° γ: 90°
R-values:
R R work R free
0.168 0.166 0.214
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Advances with Long Non-Coding RNAs in Alzheimer's Disease as Peripheral Biomarker.
Garofalo et al. (2021)
1 more

3 mentions without citation

Molecular Details of Olfactomedin Domains Provide Pathway to Structure-Function Studies.
Hill et al. (2015)
2 more