4ycw

X-ray diffraction
2.9Å resolution

Crystal structure of cladosporin in complex with plasmodium like human lysyl-tRNA synthetase mutant

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-171574 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Lysine--tRNA ligase Chains: A, B, E, F
Molecule details ›
Chains: A, B, E, F
Length: 513 amino acids
Theoretical weight: 59.2 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q15046 (Residues: 70-581; Coverage: 86%)
Gene names: KARS, KARS1, KIAA0070
Sequence domains:
Structure domains:
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 Chains: C, D, G, H
Molecule details ›
Chains: C, D, G, H
Length: 42 amino acids
Theoretical weight: 4.91 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q13155 (Residues: 1-36; Coverage: 11%)
Gene names: AIMP2, JTV1, PRO0992
Sequence domains: AIMP2 lysyl-tRNA synthetase binding domain

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL7-1
Spacegroup: P1
Unit cell:
a: 51.283Å b: 75.561Å c: 162.987Å
α: 90.8° β: 99.09° γ: 109.83°
R-values:
R R work R free
0.225 0.223 0.268
Expression system: Escherichia coli