› 4yv3

X-ray diffraction
2Å resolution

Trimeric crystal structure of vimentin coil1B fragment

Released:
DOI: 10.2210/pdb4yv3/pdb
PDB entry 4yv3 coloured by chain, front view.
PDB entry 4yv3 coloured by chain, side view.
PDB entry 4yv3 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
How to Study Intermediate Filaments in Atomic Detail.
Chernyatina AA, Hess JF, Guzenko D, Voss JC, Strelkov SV
Methods Enzymol 568 3-33 (2016)
PMID: 26795465

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-140285 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Vimentin Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 78 amino acids
Theoretical weight: 9.39 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P08670 (Residues: 161-238; Coverage: 17%)
Gene name: VIM

Ligands and Environments

2 bound ligands:
Ligand SO4 1 x SO4
Ligand CL 1 x CL
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 1
Spacegroup: P21
Unit cell:
a: 39.06Å b: 60.95Å c: 48.9Å
α: 90° β: 104.33° γ: 90°
R-values:
R R work R free
0.257 0.255 0.296
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

2 review citations

Bend, Push, Stretch: Remarkable Structure and Mechanics of Single Intermediate Filaments and Meshworks.
Sapra et al. (2021)
1 more

3 mentions without citation

Chemical Tools To Monitor and Manipulate Adaptive Immune Responses.
Doran et al. (2016)
2 more