4zcf

X-ray diffraction
2.6Å resolution

Structural basis of asymmetric DNA methylation and ATP-triggered long-range diffusion by EcoP15I

Released:

Function and Biology Details

Reactions catalysed:
S-adenosyl-L-methionine + adenine in DNA = S-adenosyl-L-homocysteine + N-6-methyladenine in DNA 
Endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates
Biochemical function:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-118371 (preferred)
Entry contents:
2 distinct polypeptide molecules
2 distinct DNA molecules
Macromolecules (4 distinct):
Type III restriction-modification enzyme EcoP15I Mod subunit Chains: A, B
Molecule details ›
Chains: A, B
Length: 644 amino acids
Theoretical weight: 74.19 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: P12364 (Residues: 1-644; Coverage: 100%)
Gene names: ecoP15Imod, mod
Sequence domains:
Type III restriction-modification enzyme EcoP15I Res subunit Chain: C
Molecule details ›
Chain: C
Length: 970 amino acids
Theoretical weight: 111.11 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5ZND2 (Residues: 1-970; Coverage: 100%)
Gene names: ecoP15Ires, res
Sequence domains:
DNA 20-mer ATACAGCAGTAGACTATGAT Chain: D
Molecule details ›
Chain: D
Length: 20 nucleotides
Theoretical weight: 6.17 KDa
DNA 20-mer AATCATAGTCTACTGCTGTA Chain: E
Molecule details ›
Chain: E
Length: 20 nucleotides
Theoretical weight: 6.11 KDa

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: P41212
Unit cell:
a: 101.838Å b: 101.838Å c: 533.031Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.221 0.218 0.262
Expression system: Escherichia coli