› 5a9a

X-ray diffraction
1.82Å resolution

Crystal structure of Simulium ubiquitum CPV20 polyhedra

Released:
DOI: 10.2210/pdb5a9a/pdb
PDB entry 5a9a coloured by chain, front view.
PDB entry 5a9a coloured by chain, side view.
PDB entry 5a9a coloured by chain, top view.
Source organism: Simulium ubiquitum cypovirus
Primary publication:
Polyhedra structures and the evolution of the insect viruses.
Ji X, Axford D, Owen R, Evans G, Ginn HM, Sutton G, Stuart DI
J Struct Biol 192 88-99 (2015)
PMID: 26291392

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170991 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Polyhedrin Chain: A
Molecule details ›
Chain: A
Length: 243 amino acids
Theoretical weight: 28.2 KDa
Source organism: Simulium ubiquitum cypovirus
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q0MX25 (Residues: 2-243; Coverage: 100%)
Sequence domains: Cypovirus polyhedrin

Ligands and Environments

1 bound ligand:
Ligand UTP 1 x UTP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I24
Spacegroup: I23
Unit cell:
a: 103.36Å b: 103.36Å c: 103.36Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.158 0.157 0.19
Expression system: Spodoptera frugiperda

Quick links

Citations

4 review citations

Where is crystallography going?
Grimes et al. (2018)
3 more

2 mentions without citation

Polyhedra structures and the evolution of the insect viruses.
Ji et al. (2015)
1 more