› 5aod

X-ray diffraction
2.4Å resolution

Crystal structure of wild type pneumolysin.

Released:
DOI: 10.2210/pdb5aod/pdb
PDB entry 5aod coloured by chain, front view.
PDB entry 5aod coloured by chain, side view.
PDB entry 5aod coloured by chain, top view.
Source organism: Streptococcus pneumoniae
Entry authors: van Pee K, Yildiz O

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182321 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pneumolysin Chain: A
Molecule details ›
Chain: A
Length: 474 amino acids
Theoretical weight: 53.24 KDa
Source organism: Streptococcus pneumoniae
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q7ZAK5 (Residues: 1-471; Coverage: 100%)
Gene names: ply, spr1739
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P212121
Unit cell:
a: 24.28Å b: 113.26Å c: 156.67Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.222 0.218 0.277
Expression system: Escherichia coli BL21

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