› 5avp

X-ray diffraction
2.9Å resolution

Crystal structure of Geodermatophilus obscurus L-ribose isomerase

Released:
DOI: 10.2210/pdb5avp/pdb
PDB entry 5avp coloured by chain, front view.
PDB entry 5avp coloured by chain, side view.
PDB entry 5avp coloured by chain, top view.
Source organism: Geodermatophilus obscurus DSM 43160
Entry authors: Terami Y, Kamitori S

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112406 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
L-ribose isomerase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 269 amino acids
Theoretical weight: 30.25 KDa
Source organism: Geodermatophilus obscurus DSM 43160
Expression system: Escherichia coli
UniProt:
  • Canonical: D2S5K0 (Residues: 1-253; Coverage: 100%)
Gene name: Gobs_2645
Structure domains: Jelly Rolls

Ligands and Environments

1 bound ligand:
Ligand MN 4 x MN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: C2
Unit cell:
a: 90.533Å b: 123.226Å c: 109.446Å
α: 90° β: 97.38° γ: 90°
R-values:
R R work R free
0.246 0.246 0.294
Expression system: Escherichia coli

Quick links