› 5azy

X-ray diffraction
1.8Å resolution

Crystal structure of p24delta1 GOLD domain (Native 2)

Released:
DOI: 10.2210/pdb5azy/pdb
PDB entry 5azy coloured by chain, front view.
PDB entry 5azy coloured by chain, side view.
PDB entry 5azy coloured by chain, top view.
Source organism: Rattus norvegicus
Primary publication:
3D Structure and Interaction of p24β and p24δ Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport.
Nagae M, Hirata T, Morita-Matsumoto K, Theiler R, Fujita M, Kinoshita T, Yamaguchi Y
J Mol Biol 428 4087-4099 (2016)
PMID: 27569046

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-179025 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Transmembrane emp24 domain-containing protein 10 Chains: A, B
Molecule details ›
Chains: A, B
Length: 103 amino acids
Theoretical weight: 11.35 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q63584 (Residues: 32-132; Coverage: 54%)
Gene names: Tmed10, Tmp21
Sequence domains: emp24/gp25L/p24 family/GOLD

Ligands and Environments

2 bound ligands:
Ligand SO4 2 x SO4
Ligand EDO 1 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL32XU
Spacegroup: P21212
Unit cell:
a: 66.798Å b: 77.354Å c: 41.68Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.235 0.233 0.28
Expression system: Escherichia coli

Quick links

Citations

6 review citations

Transmembrane emp24 domain proteins in development and disease.
Aber et al. (2019)
5 more