› 5byn

X-ray diffraction
2.65Å resolution

Canavalia maritima lectin complexed with synthetic selenoamino acid

Released:
DOI: 10.2210/pdb5byn/pdb
Model geometry
Fit model/data
PDB entry 5byn coloured by chain, front view.
PDB entry 5byn coloured by chain, side view.
PDB entry 5byn coloured by chain, top view.
Source organism: Canavalia lineata
Entry authors: Nobrega RB, Silva-Filho JC, Kawasoko CY, Rodrigues OED, Schwab RS, Braga AL, Delatorre P, Cavada BS

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-160527 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Concanavalin-A Chains: A, B
Molecule details ›
Chains: A, B
Length: 237 amino acids
Theoretical weight: 25.52 KDa
Source organism: Canavalia lineata
UniProt:
  • Canonical: P81460 (Residues: 1-237; Coverage: 100%)
Sequence domains: Legume lectin domain
Structure domains: Jelly Rolls

Ligands and Environments

6 bound ligands:
Ligand CA 2 x CA
Ligand MN 2 x MN
Ligand CD 1 x CD
Ligand PEG 1 x PEG
Ligand EDO 3 x EDO
Ligand 4WM 2 x 4WM
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: LNLS BEAMLINE W01B-MX2
Spacegroup: F23
Unit cell:
a: 190.64Å b: 190.64Å c: 190.64Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.208 0.204 0.278

Quick links