› 5cjy

X-ray diffraction
1.55Å resolution

Crystal structure of a B-form DNA duplex containing 5-hydroxylmethylcytidine

Released:
DOI: 10.2210/pdb5cjy/pdb
PDB entry 5cjy coloured by chain, front view.
PDB entry 5cjy coloured by chain, side view.
PDB entry 5cjy coloured by chain, top view.
Source organism: synthetic construct
Entry author: Sheng J

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-118485 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 12 nucleotides
Theoretical weight: 3.69 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand MG 1 x MG
1 modified residue:
Ligand 5HC 2 x 5HC

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P212121
Unit cell:
a: 25.318Å b: 40.609Å c: 65.403Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.205 0.203 0.251
Expression system: Not provided

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