› 5cmy

X-ray diffraction
2.09Å resolution

Crystal structure of yeast Ent5 N-terminal domain-native

Released:
DOI: 10.2210/pdb5cmy/pdb
PDB entry 5cmy coloured by chain, front view.
PDB entry 5cmy coloured by chain, side view.
PDB entry 5cmy coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Primary publication:
Structural and functional insight into the N-terminal domain of the clathrin adaptor Ent5 from Saccharomyces cerevisiae.
Zhang F, Song Y, Ebrahimi M, Niu L, Teng M, Li X
Biochem Biophys Res Commun 477 786-793 (2016)
PMID: 27369074

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-169944 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Epsin-5 Chains: A, B
Molecule details ›
Chains: A, B
Length: 170 amino acids
Theoretical weight: 20.28 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: Q03769 (Residues: 31-191; Coverage: 39%)
Gene names: ENT5, YDR153C
Sequence domains: ENTH domain
Structure domains: Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat

Ligands and Environments

1 bound ligand:
Ligand GOL 2 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P43
Unit cell:
a: 55.142Å b: 55.142Å c: 104.349Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.182 0.18 0.213
Expression system: Escherichia coli

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