› 5d67

X-ray diffraction
2Å resolution

Crystal structure of an EF-Hand calcium binding domain of CAP-Binding Protein Complex-Interacting Protein 1 (EFCAB6) from Homo sapiens at 2.00 A resolution

Released:
DOI: 10.2210/pdb5d67/pdb
PDB entry 5d67 coloured by chain, front view.
PDB entry 5d67 coloured by chain, side view.
PDB entry 5d67 coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Joint Center for Structural Genomics (JCSG), Partnership for Nuclear Receptor Signaling Code Biology, Partnership for Nuclear Receptor Signaling Code Biology (NHRS)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178335 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
EF-hand calcium-binding domain-containing protein 6 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 102 amino acids
Theoretical weight: 11.78 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5THR3 (Residues: 1160-1260; Coverage: 7%)
Gene names: DJBP, EFCAB6, KIAA1672
Sequence domains: EF-hand domain
Structure domains: EF-hand

Ligands and Environments

1 bound ligand:
Ligand SO4 15 x SO4
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL14-1
Spacegroup: P21
Unit cell:
a: 43.407Å b: 67.187Å c: 70.697Å
α: 90° β: 100.05° γ: 90°
R-values:
R R work R free
0.17 0.169 0.203
Expression system: Escherichia coli

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