› 5dfs

X-ray diffraction
1.15Å resolution

Crystal structure of Spider Monkey Cytochrome C at 1.15 Angstrom

Released:
DOI: 10.2210/pdb5dfs/pdb
PDB entry 5dfs coloured by chain, front view.
PDB entry 5dfs coloured by chain, side view.
PDB entry 5dfs coloured by chain, top view.
Source organism: Ateles sp.
Primary publication:
Disruption of a hydrogen bond network in human versus spider monkey cytochrome c affects heme crevice stability.
Goldes ME, Jeakins-Cooley ME, McClelland LJ, Mou TC, Bowler BE
J Inorg Biochem 158 62-69 (2016)
PMID: 26775610

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132210 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c Chains: A, B
Molecule details ›
Chains: A, B
Length: 105 amino acids
Theoretical weight: 11.85 KDa
Source organism: Ateles sp.
Expression system: Escherichia coli
UniProt:
  • Canonical: P00003 (Residues: 1-105; Coverage: 100%)
Gene names: CYC, CYCS
Sequence domains: Cytochrome c
Structure domains: Cytochrome c-like domain

Ligands and Environments

3 bound ligands:
Ligand HEC 2 x HEC
Ligand EDO 6 x EDO
Ligand CL 2 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL14-1
Spacegroup: P21
Unit cell:
a: 31.534Å b: 42.733Å c: 67.654Å
α: 90° β: 94.47° γ: 90°
R-values:
R R work R free
0.16 0.16 0.182
Expression system: Escherichia coli

Quick links

Citations

11 citation in other articles

Cytochrome c Can Form a Well-Defined Binding Pocket for Hydrocarbons.
McClelland et al. (2016)
10 more

1 mention without citation

Disruption of a hydrogen bond network in human versus spider monkey cytochrome c affects heme crevice stability.
Goldes et al. (2016)