› 5dqv

X-ray diffraction
2Å resolution

The crystal structure of Bacillus subtilis YpgQ

Released:
DOI: 10.2210/pdb5dqv/pdb
PDB entry 5dqv coloured by chain, front view.
PDB entry 5dqv coloured by chain, side view.
PDB entry 5dqv coloured by chain, top view.
Source organism: Bacillus subtilis
Primary publication:
Structural and biochemical characterization of bacterial YpgQ protein reveals a metal-dependent nucleotide pyrophosphohydrolase.
Jeon YJ, Park SC, Song WS, Kim OH, Oh BC, Yoon SI
J Struct Biol 195 113-22 (2016)
PMID: 27062940

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-165567 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Uncharacterized protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 211 amino acids
Theoretical weight: 23.66 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand NI 2 x NI
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: P21
Unit cell:
a: 47.061Å b: 53.432Å c: 82.61Å
α: 90° β: 94.13° γ: 90°
R-values:
R R work R free
0.19 0.188 0.228
Expression system: Escherichia coli

Quick links

Citations

1 review citation

Mechanisms supporting aminoadenine-based viral DNA genomes.
Kaminski PA. (2021)
12 other articles

2 mentions without citation

The HD-Domain Metalloprotein Superfamily: An Apparent Common Protein Scaffold with Diverse Chemistries.
Langton et al. (2020)
1 more