› 5e6t

X-ray diffraction
2.27Å resolution

Crystal structure of bovine norovirus P domain

Released:
DOI: 10.2210/pdb5e6t/pdb
PDB entry 5e6t coloured by chain, front view.
PDB entry 5e6t coloured by chain, side view.
PDB entry 5e6t coloured by chain, top view.
Source organism: Norovirus Bo/GIII/B309/2003/BEL
Primary publication:
Structural analysis of bovine norovirus protruding domain.
Singh BK, Koromyslova A, Hansman GS
Virology 487 296-301 (2016)
PMID: 26599362

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-123038 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid Chains: A, B
Molecule details ›
Chains: A, B
Length: 288 amino acids
Theoretical weight: 31.36 KDa
Source organism: Norovirus Bo/GIII/B309/2003/BEL
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: E6Y5B1 (Residues: 222-507; Coverage: 55%)
Sequence domains: Calicivirus coat protein C-terminal
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand ZN 8 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: C2
Unit cell:
a: 112.92Å b: 63.86Å c: 87.56Å
α: 90° β: 115.06° γ: 90°
R-values:
R R work R free
0.197 0.195 0.241
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

3 citation in other articles

Human Norovirus Neutralized by a Monoclonal Antibody Targeting the Histo-Blood Group Antigen Pocket.
Koromyslova et al. (2019)
2 more

1 mention without citation

Prevalence and complete genome of bovine norovirus with novel VP1 genotype in calves in China.
Wang et al. (2019)