5e8f

X-ray diffraction
2.1Å resolution

Structure of Fully modified geranylgeranylated PDE6C Peptide in complex with PDE6D

Released:
Source organism: Homo sapiens
Primary publication:
The N- and C-terminal ends of RPGR can bind to PDE6δ.
EMBO Rep 16 1583-5 (2015)
PMID: 26553937

Function and Biology Details

Reaction catalysed:
Guanosine 3',5'-cyclic phosphate + H(2)O = guanosine 5'-phosphate
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-129173 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta Chains: A, C
Molecule details ›
Chains: A, C
Length: 149 amino acids
Theoretical weight: 17.31 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: O43924 (Residues: 2-150; Coverage: 99%)
Gene names: PDE6D, PDED
Sequence domains: GMP-PDE, delta subunit
Structure domains: GMP phosphodiesterase, delta subunit
Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' Chains: D, E
Molecule details ›
Chains: D, E
Length: 5 amino acids
Theoretical weight: 582 Da
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P51160 (Residues: 851-855; Coverage: 1%)
Gene names: PDE6C, PDEA2

Ligands and Environments

1 bound ligand:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: C2221
Unit cell:
a: 77.71Å b: 81.43Å c: 118.53Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.201 0.198 0.256
Expression system: Escherichia coli