5elq

X-ray diffraction
1.1Å resolution

Crystal structure of the SNX27 PDZ domain bound to the C-terminal DGKzeta PDZ binding motif

Released:

Function and Biology Details

Reactions catalysed:
ATP + 1,2-diacyl-sn-glycerol = ADP + 1,2-diacyl-sn-glycerol 3-phosphate
ATP + 1-O-alkyl-sn-glycerol = ADP + 1-O-alkyl-sn-glycerol 3-phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-171767 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Sorting nexin-27 Chains: A, B
Molecule details ›
Chains: A, B
Length: 101 amino acids
Theoretical weight: 10.57 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8K4V4 (Residues: 39-133; Coverage: 18%)
Gene names: Mrt1, Snx27
Sequence domains: PDZ domain
Diacylglycerol kinase zeta Chains: C, P
Molecule details ›
Chains: C, P
Length: 8 amino acids
Theoretical weight: 948 Da
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q13574 (Residues: 921-928; Coverage: 1%)
Gene names: DAGK6, DGKZ

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Unit cell:
a: 48.94Å b: 54.12Å c: 74.24Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.164 0.163 0.18
Expression systems:
  • Escherichia coli
  • Not provided