› 5exb

X-ray diffraction
1.81Å resolution

Wild type green fluorescent protein DendFP (Dendronephthya sp.)

Released:
DOI: 10.2210/pdb5exb/pdb
PDB entry 5exb coloured by chain, front view.
PDB entry 5exb coloured by chain, side view.
PDB entry 5exb coloured by chain, top view.
Source organism: Dendronephthya sp.
Primary publication:
Crystal structure of the fluorescent protein from Dendronephthya sp. in both green and photoconverted red forms.
Pletneva NV, Pletnev S, Pakhomov AA, Chertkova RV, Martynov VI, Muslinkina L, Dauter Z, Pletnev VZ
Acta Crystallogr D Struct Biol 72 922-32 (2016)
PMID: 27487823

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-186141 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Green fluorescent protein Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Length: 232 amino acids
Theoretical weight: 26.85 KDa
Source organism: Dendronephthya sp.
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8T6U0 (Residues: 2-225; Coverage: 100%)
Sequence domains: Green fluorescent protein
Structure domains: Green fluorescent protein

Ligands and Environments

1 bound ligand:
Ligand GOL 3 x GOL
1 modified residue:
Ligand 5SQ 16 x 5SQ

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: P1
Unit cell:
a: 69.384Å b: 106.397Å c: 137.209Å
α: 109.68° β: 100.01° γ: 101.72°
R-values:
R R work R free
0.183 0.182 0.249
Expression system: Escherichia coli

Quick links

Citations

2 mentions without citation

Metal-Induced Fluorescence Quenching of Photoconvertible Fluorescent Protein DendFP.
Kim et al. (2022)
1 more