› 5ezf

X-ray diffraction
1.65Å resolution

Racemic crystal structures of Pribnow box consensus promoter sequence (Pbca)

Released:
DOI: 10.2210/pdb5ezf/pdb
PDB entry 5ezf coloured by chain, front view.
PDB entry 5ezf coloured by chain, side view.
PDB entry 5ezf coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Mandal PK, Collie GW, Srivastava SC, Kauffmann B, Huc I
Nucleic Acids Res 44 5936-43 (2016)
PMID: 27137886

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-118656 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
Pribnow box template strand Chain: A
Molecule details ›
Chain: A
Length: 12 nucleotides
Theoretical weight: 3.66 KDa
Source organism: synthetic construct
Expression system: Not provided
Complementary strand Chain: B
Molecule details ›
Chain: B
Length: 12 nucleotides
Theoretical weight: 3.66 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand CA 2 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 1
Unit cell:
a: 41.736Å b: 39.329Å c: 65.713Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.297 0.296 0.317
Expression system: Not provided

Quick links

Citations

4 citation in other articles

Crystal structure of a complex between β-glucopyranose and a macrocyclic receptor with dendritic multicharged water solubilizing chains.
Mandal et al. (2016)
3 more

2 mentions without citation

Di-copper metallodrugs promote NCI-60 chemotherapy via singlet oxygen and superoxide production with tandem TA/TA and AT/AT oligonucleotide discrimination.
Slator et al. (2018)
1 more