5fuu

Electron Microscopy
4.2Å resolution

Ectodomain of cleaved wild type JR-FL EnvdCT trimer in complex with PGT151 Fab

Released:
Related structures: EMD-3308

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero decamer (preferred)
PDBe Complex ID:
PDB-CPX-212348 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (15 distinct):
Envelope glycoprotein gp160 Chains: A, C, E
Molecule details ›
Chains: A, C, E
Length: 473 amino acids
Theoretical weight: 53.34 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Homo sapiens
UniProt:
  • Canonical: Q6BC19 (Residues: 30-502; Coverage: 56%)
Gene name: env
Sequence domains: Envelope glycoprotein GP120
Envelope glycoprotein gp160 Chains: B, D, F
Molecule details ›
Chains: B, D, F
Length: 153 amino acids
Theoretical weight: 17.24 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Homo sapiens
UniProt:
  • Canonical: Q6BC19 (Residues: 503-655; Coverage: 18%)
Gene name: env
Sequence domains: Retroviral envelope protein
IMMUNOGLOBULIN G PGT151 Chains: H, M
Molecule details ›
Chains: H, M
Length: 240 amino acids
Theoretical weight: 26.09 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
IMMUNOGLOBULIN G PGT151 Chains: L, N
Molecule details ›
Chains: L, N
Length: 219 amino acids
Theoretical weight: 24.06 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN, GAL, FUC
Carbohydrate polymer : NEW Components: NAG, BMA, MAN, GAL, FUC
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN, GAL, FUC
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.2Å
Relevant EMDB volumes: EMD-3308
Expression system: Homo sapiens