5gas

Electron Microscopy
9.5Å resolution

Thermus thermophilus V/A-ATPase, conformation 2

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 26-mer (preferred)
PDBe Complex ID:
PDB-CPX-124980 (preferred)
Entry contents:
9 distinct polypeptide molecules
Macromolecules (9 distinct):
V-type ATP synthase alpha chain Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 577 amino acids
Theoretical weight: 63.63 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q56403 (Residues: 1-577; Coverage: 100%)
Gene names: TTHA1273, atpA
Sequence domains:
V-type ATP synthase beta chain Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 457 amino acids
Theoretical weight: 50.85 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q56404 (Residues: 7-463; Coverage: 96%)
Gene names: TTHA1272, atpB
Sequence domains:
V-type ATP synthase subunit E Chains: G, H
Molecule details ›
Chains: G, H
Length: 186 amino acids
Theoretical weight: 20.48 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P74901 (Residues: 3-188; Coverage: 99%)
Gene names: TTHA1276, atpE, vatE
Sequence domains: ATP synthase (E/31 kDa) subunit
V-type ATP synthase, subunit (VAPC-THERM) Chains: I, J
Molecule details ›
Chains: I, J
Length: 105 amino acids
Theoretical weight: 11.75 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q5SIT5 (Residues: 17-120; Coverage: 87%)
Gene name: TTHA1279
Sequence domains: Vacuolar (H+)-ATPase G subunit
V-type ATP synthase subunit D Chain: K
Molecule details ›
Chain: K
Length: 210 amino acids
Theoretical weight: 23.35 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: O87880 (Residues: 2-211; Coverage: 94%)
Gene names: TTHA1271, atpD, vatD
Sequence domains: ATP synthase subunit D
V-type ATP synthase subunit F Chain: L
Molecule details ›
Chain: L
Length: 100 amino acids
Theoretical weight: 10.82 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P74903 (Residues: 1-100; Coverage: 96%)
Gene names: TTHA1274, atpF, vatF
Sequence domains: ATP synthase (F/14-kDa) subunit
V-type ATP synthase subunit C Chain: M
Molecule details ›
Chain: M
Length: 323 amino acids
Theoretical weight: 35.97 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P74902 (Residues: 1-323; Coverage: 100%)
Gene names: TTHA1275, atpC
Sequence domains: ATP synthase (C/AC39) subunit
V-type ATP synthase subunit I Chain: N
Molecule details ›
Chain: N
Length: 652 amino acids
Theoretical weight: 72.27 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: H9ZQR4 (Residues: 1-652; Coverage: 100%)
Gene name: TtJL18_0771
Sequence domains:
V-ATPase proteolipid subunit C-like domain-containing protein Chains: O, P, Q, R, S, T, U, V, W, X, Y, Z
Molecule details ›
Chains: O, P, Q, R, S, T, U, V, W, X, Y, Z
Length: 99 amino acids
Theoretical weight: 9.84 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q5SIT7 (Residues: 1-99; Coverage: 100%)
Gene name: TTHA1277
Sequence domains: ATP synthase subunit C

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 9.5Å
Relevant EMDB volumes: EMD-8017