5gtu

X-ray diffraction
1.5Å resolution

Structural and mechanistic insights into regulation of the retromer coat by TBC1d5

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-187709 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Vacuolar protein sorting-associated protein 29 Chain: A
Molecule details ›
Chain: A
Length: 186 amino acids
Theoretical weight: 20.96 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9UBQ0 (Residues: 2-182; Coverage: 100%)
Gene names: DC15, DC7, MDS007, VPS29
Sequence domains: Calcineurin-like phosphoesterase superfamily domain
Structure domains: Purple Acid Phosphatase; chain A, domain 2
TBC1 domain family member 5 Chain: B
Molecule details ›
Chain: B
Length: 27 amino acids
Theoretical weight: 3.18 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q92609 (Residues: 132-158; Coverage: 3%)
Gene names: KIAA0210, TBC1D5

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 43.881Å b: 63.832Å c: 78.01Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.141 0.139 0.186
Expression system: Escherichia coli