5gve

X-ray diffraction
3.61Å resolution

Human TOP3B-TDRD3 complex

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-132097 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
DNA topoisomerase 3-beta-1 Chain: A
Molecule details ›
Chain: A
Length: 613 amino acids
Theoretical weight: 69.16 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: O95985 (Residues: 1-612; Coverage: 71%)
Gene names: TOP3B, TOP3B1
Sequence domains:
Structure domains:
Tudor domain-containing protein 3 Chain: B
Molecule details ›
Chain: B
Length: 165 amino acids
Theoretical weight: 17.78 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9H7E2 (Residues: 1-68; Coverage: 10%)
Gene name: TDRD3
Sequence domains: RMI1, N-terminal OB-fold domain

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P65
Unit cell:
a: 173.563Å b: 173.563Å c: 111.81Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.2 0.198 0.245
Expression systems:
  • Spodoptera frugiperda
  • Escherichia coli