› 5gyy

X-ray diffraction
2.35Å resolution

Plant receptor complex

Released:
DOI: 10.2210/pdb5gyy/pdb
PDB entry 5gyy coloured by chain, front view.
PDB entry 5gyy coloured by chain, side view.
PDB entry 5gyy coloured by chain, top view.
Source organism: Brassica rapa
Entry authors: Ma R, Han Z, Hu Z, Lin G, Gong X, Zhang H, June N, Chai J

Function and Biology Details

Reaction catalysed: 
ATP + a protein = ADP + a phosphoprotein
Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-181504 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
S-receptor kinase SRK9 Chains: A, B
Molecule details ›
Chains: A, B
Length: 405 amino acids
Theoretical weight: 45.86 KDa
Source organism: Brassica rapa
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q7DN95 (Residues: 28-427; Coverage: 49%)
Sequence domains:
Knottin scorpion toxin-like domain-containing protein Chains: G, H
Molecule details ›
Chains: G, H
Length: 59 amino acids
Theoretical weight: 6.47 KDa
Source organism: Brassica rapa
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q9ST12 (Residues: 24-78; Coverage: 92%)
Gene name: SP11
Sequence domains: Plant self-incompatibility response (SCRL) protein

Ligands and Environments

1 bound ligand:
Ligand NAG 2 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P212121
Unit cell:
a: 62.249Å b: 135.121Å c: 153.907Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.199 0.196 0.254
Expression system: Trichoplusia ni

Quick links