› 5h11

X-ray diffraction
2.73Å resolution

Crystal structure of Zebrafish Sec10

Released:
DOI: 10.2210/pdb5h11/pdb
PDB entry 5h11 coloured by chain, front view.
PDB entry 5h11 coloured by chain, side view.
PDB entry 5h11 coloured by chain, top view.
Source organism: Danio rerio
Primary publication:
Crystal structure of Sec10, a subunit of the exocyst complex.
Chen J, Yamagata A, Kubota K, Sato Y, Goto-Ito S, Fukai S
Sci Rep 7 40909 (2017)
PMID: 28098232

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109118 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Exocyst complex component 5 Chain: A
Molecule details ›
Chain: A
Length: 509 amino acids
Theoretical weight: 58.35 KDa
Source organism: Danio rerio
Expression system: Escherichia coli
UniProt:
  • Canonical: B0BLY0 (Residues: 195-708; Coverage: 71%)
Gene names: exoc5, zgc:175220
Sequence domains: Exocyst complex component Sec10-like, alpha-helical bundle

Ligands and Environments

1 bound ligand:
Ligand BR 10 x BR
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: C2
Unit cell:
a: 147.693Å b: 162.652Å c: 45.572Å
α: 90° β: 95.55° γ: 90°
R-values:
R R work R free
0.238 0.236 0.267
Expression system: Escherichia coli

Quick links

Citations

1 review citation

The role of the exocyst in renal ciliogenesis, cystogenesis, tubulogenesis, and development.
Lipschutz JH. (2019)
4 other articles

8 mentions without citation

Exposing the Elusive Exocyst Structure.
Lepore et al. (2018)
7 more