› 5h48

X-ray diffraction
2.2Å resolution

Crystal structure of Cbln1

Released:
DOI: 10.2210/pdb5h48/pdb
PDB entry 5h48 coloured by chain, front view.
PDB entry 5h48 coloured by chain, side view.
PDB entry 5h48 coloured by chain, top view.
Source organism: Rattus norvegicus
Primary publication:
Cbln1 and Cbln4 Are Structurally Similar but Differ in GluD2 Binding Interactions.
Zhong C, Shen J, Zhang H, Li G, Shen S, Wang F, Hu K, Cao L, He Y, Ding J
Cell Rep 20 2328-2340 (2017)
PMID: 28877468

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-159031 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Cerebellin-1 Chain: A
Molecule details ›
Chain: A
Length: 184 amino acids
Theoretical weight: 20.42 KDa
Source organism: Rattus norvegicus
Expression system: Homo sapiens
UniProt:
  • Canonical: P63182 (Residues: 22-193; Coverage: 100%)
Gene name: Cbln1
Sequence domains: C1q domain
Structure domains: Jelly Rolls

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: P6
Unit cell:
a: 82.981Å b: 82.981Å c: 50.543Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.165 0.163 0.203
Expression system: Homo sapiens

Quick links

Citations

3 review citations

Shaping Synapses by the Neural Extracellular Matrix.
Ferrer-Ferrer et al. (2018)
2 more