› 5ha6

X-ray diffraction
2Å resolution

Crystal structure of human syncytin-1 fusion subunit

Released:
DOI: 10.2210/pdb5ha6/pdb
PDB entry 5ha6 coloured by chain, front view.
PDB entry 5ha6 coloured by chain, side view.
PDB entry 5ha6 coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Aydin H, Lee JE

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-194066 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Transmembrane protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 117 amino acids
Theoretical weight: 13.32 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9UQF0 (Residues: 343-435; Coverage: 18%)
Gene names: ERVW-1, ERVWE1
Structure domains: Helix Hairpins

Ligands and Environments

1 bound ligand:
Ligand CL 2 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CLSI BEAMLINE 08ID-1
Spacegroup: R32
Unit cell:
a: 48.118Å b: 48.118Å c: 378.911Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.2 0.199 0.233
Expression system: Escherichia coli

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