› 5i36

X-ray diffraction
5.12Å resolution

Crystal structure of color device state A

Released:
DOI: 10.2210/pdb5i36/pdb
PDB entry 5i36 coloured by chain, front view.
PDB entry 5i36 coloured by chain, side view.
PDB entry 5i36 coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
A device that operates within a self-assembled 3D DNA crystal.
Hao Y, Kristiansen M, Sha R, Birktoft JJ, Hernandez C, Mao C, Seeman NC
Nat Chem 9 824-827 (2017)
PMID: 28754940

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero heptamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-118772 (preferred)
Entry contents:
7 distinct DNA molecules
Macromolecules (7 distinct):
DNA (5'-D(*GP*TP*CP*CP*TP*AP*CP*CP*TP*GP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*T)-3') Chain: A
Molecule details ›
Chain: A
Length: 21 nucleotides
Theoretical weight: 6.42 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (26-MER) Chain: B
Molecule details ›
Chain: B
Length: 26 nucleotides
Theoretical weight: 7.85 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*TP*GP*GP*TP*AP*GP*G)-3') Chain: C
Molecule details ›
Chain: C
Length: 14 nucleotides
Theoretical weight: 4.37 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (5'-D(*AP*CP*AP*GP*TP*CP*GP*TP*GP*GP*TP*AP*TP*C)-3') Chain: D
Molecule details ›
Chain: D
Length: 14 nucleotides
Theoretical weight: 4.3 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (5'-D(*TP*GP*CP*GP*TP*AP*GP*TP*GP*GP*TP*CP*GP*C)-3') Chain: E
Molecule details ›
Chain: E
Length: 14 nucleotides
Theoretical weight: 4.33 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (5'-D(*CP*AP*GP*AP*TP*AP*CP*CP*TP*GP*AP*TP*CP*GP*GP*AP*CP*TP*AP*CP*G)-3') Chain: F
Molecule details ›
Chain: F
Length: 21 nucleotides
Theoretical weight: 6.43 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (5'-D(*GP*AP*GP*CP*GP*AP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3') Chain: G
Molecule details ›
Chain: G
Length: 21 nucleotides
Theoretical weight: 6.46 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P1
Unit cell:
a: 67.53Å b: 69.131Å c: 70.106Å
α: 98.19° β: 97.34° γ: 99.74°
R-values:
R R work R free
0.137 0.134 0.165
Expression system: Not provided

Quick links

Citations

8 review citations

Structural DNA Nanotechnology: Artificial Nanostructures for Biomedical Research.
Ke et al. (2018)
7 more