5ine

X-ray diffraction
3.5Å resolution

Crystal structure of the prefusion glycoprotein of LCMV

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-139581 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (4 distinct):
Pre-glycoprotein polyprotein GP complex Chains: A, B
Molecule details ›
Chains: A, B
Length: 438 amino acids
Theoretical weight: 49.54 KDa
Source organism: Mammarenavirus choriomeningitidis
Expression system: Drosophila melanogaster
UniProt:
  • Canonical: P07399 (Residues: 1-438; Coverage: 88%)
Gene names: GP-C, GPC
Sequence domains: Arenavirus glycoprotein

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 1
Spacegroup: I432
Unit cell:
a: 262.33Å b: 262.33Å c: 262.33Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.212 0.211 0.231
Expression system: Drosophila melanogaster