5j5p

X-ray diffraction
1.97Å resolution

AMP-PNP-stabilized ATPase domain of topoisomerase IV from Streptococcus pneumoniae, complex type I

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
PDBe Complex ID:
PDB-CPX-118863 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct DNA molecule
Macromolecules (2 distinct):
DNA topoisomerase 4 subunit B Chains: A, B
Molecule details ›
Chains: A, B
Length: 409 amino acids
Theoretical weight: 45.03 KDa
Source organism: Streptococcus pneumoniae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q59961 (Residues: 1-402; Coverage: 62%)
Gene names: SP_0852, parE
Sequence domains:
Structure domains:
DNA (5'-D(*GP*CP*GP*CP*GP*C)-3') Chains: C, D, E, F
Molecule details ›
Chains: C, D, E, F
Length: 6 nucleotides
Theoretical weight: 1.81 KDa
Source organism: synthetic construct
Expression system: synthetic construct

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: C2221
Unit cell:
a: 134.44Å b: 136.46Å c: 136.27Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.152 0.15 0.174
Expression systems:
  • Escherichia coli BL21(DE3)
  • synthetic construct