› 5ji9

X-ray diffraction
2.5Å resolution

The Crystal Structure Of IUS-SPRY Domain From RanBPM/9

Released:
DOI: 10.2210/pdb5ji9/pdb
PDB entry 5ji9 coloured by chain, front view.
PDB entry 5ji9 coloured by chain, side view.
PDB entry 5ji9 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structural Basis for the Interaction between the IUS-SPRY Domain of RanBPM and DDX-4 in Germ Cell Development.
Hong SK, Kim KH, Song EJ, Kim EE
J Mol Biol 428 4330-4344 (2016)
PMID: 27622290

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188748 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ran-binding protein 9 Chain: A
Molecule details ›
Chain: A
Length: 243 amino acids
Theoretical weight: 26.34 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q96S59 (Residues: 108-350; Coverage: 33%)
Gene names: RANBP9, RANBPM
Sequence domains: SPRY domain
Structure domains: Jelly Rolls

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: P65
Unit cell:
a: 69.478Å b: 69.478Å c: 107.688Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.173 0.167 0.227
Expression system: Escherichia coli

Quick links

Citations

4 review citations

Cell signalling pathway regulation by RanBPM: molecular insights and disease implications.
Salemi et al. (2017)
3 more