› 5jv4

X-ray diffraction
1.7Å resolution

Structure of F420 binding protein, MSMEG_6526, from Mycobacterium smegmatis with F420 bound

Released:
DOI: 10.2210/pdb5jv4/pdb
Model geometry
Fit model/data
PDB entry 5jv4 coloured by chain, front view.
PDB entry 5jv4 coloured by chain, side view.
PDB entry 5jv4 coloured by chain, top view.
Source organism: Mycolicibacterium smegmatis
Entry authors: Lee BM, Carr PD, Jackson CJ

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106492 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyridoxamine 5'-phosphate oxidase N-terminal domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 154 amino acids
Theoretical weight: 17.34 KDa
Source organism: Mycolicibacterium smegmatis
Expression system: Escherichia coli
UniProt:
  • Canonical: A0R6F1 (Residues: 1-142; Coverage: 100%)
Gene name: MSMEG_6526
Sequence domains: Pyridoxamine 5'-phosphate oxidase
Structure domains: Electron Transport, Fmn-binding Protein; Chain A

Ligands and Environments

4 bound ligands:
Ligand F42 6 x F42
Ligand MPD 7 x MPD
Ligand MRD 2 x MRD
Ligand NA 1 x NA
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX1
Spacegroup: C2
Unit cell:
a: 139.951Å b: 84.241Å c: 75.98Å
α: 90° β: 90.85° γ: 90°
R-values:
R R work R free
0.191 0.189 0.231
Expression system: Escherichia coli

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