› 5kib

Solution NMR

Structural impact of single ribonucleotides in DNA

Released:
DOI: 10.2210/pdb5kib/pdb
PDB entry 5kib coloured by chain, ensemble of 10 models, front view.
PDB entry 5kib coloured by chain, ensemble of 10 models, side view.
PDB entry 5kib coloured by chain, ensemble of 10 models, top view.
Source organism: synthetic construct
Primary publication:
Structural Impact of Single Ribonucleotide Residues in DNA.
Evich M, Spring-Connell AM, Storici F, Germann MW
Chembiochem 17 1968-1977 (2016)
PMID: 27504600

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-113183 (preferred)
Entry contents:
1 distinct DNA molecule
1 distinct DNA/RNA hybrid molecule
Macromolecules (2 distinct):
DNA (5'-D(*CP*AP*GP*GP*CP*CP*TP*AP*A)-3') Chain: B
Molecule details ›
Chain: B
Length: 9 nucleotides
Theoretical weight: 2.72 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA/RNA (5'-D(*TP*TP*AP*G)-R(P*G)-D(P*CP*CP*TP*G)-3') Chain: A
Molecule details ›
Chain: A
Length: 9 nucleotides
Theoretical weight: 2.76 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 33%
Refinement method: matrix relaxation, molecular dynamics
Expression system: Not provided

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Citations

2 review citations

Unveiling the non-repair face of the Base Excision Repair pathway in RNA processing: A missing link between DNA repair and gene expression?
Antoniali et al. (2017)
1 more