› 5kon

X-ray diffraction
1.51Å resolution

Protruding domain of GII.4 human norovirus isolate 08-14

Released:
DOI: 10.2210/pdb5kon/pdb
PDB entry 5kon coloured by chain, front view.
PDB entry 5kon coloured by chain, side view.
PDB entry 5kon coloured by chain, top view.
Source organism: Norovirus GII.4
Entry authors: Singh BK, Hansman GS

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-103100 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 310 amino acids
Theoretical weight: 34.25 KDa
Source organism: Norovirus GII.4
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A172QPU7 (Residues: 225-530; Coverage: 57%)
Gene name: VP1
Sequence domains: Calicivirus coat protein C-terminal
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand EDO 15 x EDO
Ligand MES 3 x MES
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-2
Spacegroup: P21
Unit cell:
a: 63.64Å b: 55.27Å c: 86.81Å
α: 90° β: 99.56° γ: 90°
R-values:
R R work R free
0.129 0.126 0.175
Expression system: Escherichia coli BL21(DE3)

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