› 5li3

X-ray diffraction
2.4Å resolution

Crystal structure of HDAC-like protein from P. aeruginosa in complex with a photo-switchable inhibitor.

Released:
DOI: 10.2210/pdb5li3/pdb
PDB entry 5li3 coloured by chain, front view.
PDB entry 5li3 coloured by chain, side view.
PDB entry 5li3 coloured by chain, top view.
Source organism: Pseudomonas aeruginosa
Primary publication:
Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.
Weston CE, Krämer A, Colin F, Yildiz Ö, Baud MG, Meyer-Almes FJ, Fuchter MJ
ACS Infect Dis 3 152-161 (2017)
PMID: 27756124

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Histone deacetylase-like amidohydrolase Chains: A, B
Molecule details ›
Chains: A, B
Length: 380 amino acids
Theoretical weight: 41.1 KDa
Source organism: Pseudomonas aeruginosa
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9HXM1 (Residues: 1-380; Coverage: 100%)
Gene name: PA3774
Sequence domains: Histone deacetylase domain
Structure domains: Histone deacetylase domain

Ligands and Environments

3 bound ligands:
Ligand ZN 2 x ZN
Ligand K 4 x K
Ligand 9RB 2 x 9RB
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P41212
Unit cell:
a: 82.19Å b: 82.19Å c: 217.03Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.227 0.225 0.27
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

9 review citations

Optochemical Control of Biological Processes in Cells and Animals.
Ankenbruck et al. (2018)
8 more