5lsw

X-ray diffraction
2.15Å resolution

A CAF40-binding motif facilitates recruitment of the CCR4-NOT complex to mRNAs targeted by Drosophila Roquin

Released:

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-187708 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
CCR4-NOT transcription complex subunit 9 Chains: A, C
Molecule details ›
Chains: A, C
Length: 273 amino acids
Theoretical weight: 31.07 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q92600 (Residues: 19-285; Coverage: 89%)
Gene names: CNOT9, RCD1, RQCD1
Sequence domains: Cell differentiation family, Rcd1-like
Structure domains: Leucine-rich Repeat Variant
RING-type E3 ubiquitin transferase Chains: B, D
Molecule details ›
Chains: B, D
Length: 21 amino acids
Theoretical weight: 2.28 KDa
Source organism: Drosophila melanogaster
Expression system: Not provided
UniProt:
  • Canonical: Q9VV48 (Residues: 790-810; Coverage: 3%)
Gene names: CG16807, Dmel\CG16807, Dmel_CG16807, NEST:bs21b12, Roq, roq

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P21
Unit cell:
a: 56.93Å b: 103.69Å c: 60.83Å
α: 90° β: 113° γ: 90°
R-values:
R R work R free
0.186 0.184 0.226
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided