5lvc

Electron Microscopy
4.2Å resolution

Aichi virus 1: empty particle

Released:
Source organism: Aichivirus A
Related structures: EMD-4112

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
ATP + H(2)O = ADP + phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-131640 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Capsid protein VP1 Chain: a
Molecule details ›
Chain: a
Length: 253 amino acids
Theoretical weight: 27.19 KDa
Source organism: Aichivirus A
Expression system: Chlorocebus sabaeus
UniProt:
  • Canonical: O91464 (Residues: 764-1016; Coverage: 10%)
Sequence domains: picornavirus capsid protein
Capsid protein VP0 Chain: b
Molecule details ›
Chain: b
Length: 370 amino acids
Theoretical weight: 38.95 KDa
Source organism: Aichivirus A
Expression system: Chlorocebus sabaeus
UniProt:
  • Canonical: O91464 (Residues: 171-540; Coverage: 15%)
Sequence domains: picornavirus capsid protein
Capsid protein VP3 Chain: c
Molecule details ›
Chain: c
Length: 223 amino acids
Theoretical weight: 24.08 KDa
Source organism: Aichivirus A
UniProt:
  • Canonical: O91464 (Residues: 541-763; Coverage: 9%)
Sequence domains: picornavirus capsid protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.2Å
Relevant EMDB volumes: EMD-4112
Expression system: Chlorocebus sabaeus