5m5u

X-ray diffraction
2.15Å resolution

Clathrin heavy chain N-terminal domain bound to a clathrin-box motif from hepatitis D virus large antigen (clade 1)

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-143056 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Clathrin heavy chain 1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 365 amino acids
Theoretical weight: 40.54 KDa
Source organism: Bos taurus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P49951 (Residues: 1-363; Coverage: 22%)
Gene name: CLTC
Sequence domains:
Structure domains: Clathrin heavy-chain terminal domain
Large delta antigen Chains: E, F, G, H
Molecule details ›
Chains: E, F, G, H
Length: 9 amino acids
Theoretical weight: 964 Da
Source organism: Hepatitis delta virus (ISOLATE ITALIAN)
Expression system: Not provided
UniProt:
  • Canonical: P0C6L6 (Residues: 196-204; Coverage: 4%)

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: C2
Unit cell:
a: 136.23Å b: 131.19Å c: 77.87Å
α: 90° β: 115.61° γ: 90°
R-values:
R R work R free
0.177 0.175 0.207
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided