› 5mdm

X-ray diffraction
3Å resolution

Structural intermediates in the fusion associated transition of vesiculovirus glycoprotein

Released:
DOI: 10.2210/pdb5mdm/pdb
PDB entry 5mdm coloured by chain, front view.
PDB entry 5mdm coloured by chain, side view.
PDB entry 5mdm coloured by chain, top view.
Source organism: Chandipura virus
Primary publication:
Structural intermediates in the fusion-associated transition of vesiculovirus glycoprotein.
Baquero E, Albertini AA, Raux H, Abou-Hamdan A, Boeri-Erba E, Ouldali M, Buonocore L, Rose JK, Lepault J, Bressanelli S, Gaudin Y
EMBO J 36 679-692 (2017)
PMID: 28188244

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-146490 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Glycoprotein Chains: A, C, E, F
Molecule details ›
Chains: A, C, E, F
Length: 419 amino acids
Theoretical weight: 46.81 KDa
Source organism: Chandipura virus
UniProt:
  • Canonical: P13180 (Residues: 22-440; Coverage: 82%)
Gene name: G
Sequence domains: Rhabdovirus spike glycoprotein

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer
2 bound ligands:
Ligand SO4 1 x SO4
Ligand NAG 2 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P21212
Unit cell:
a: 150.34Å b: 228.21Å c: 78.84Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.188 0.222

Quick links

Citations

1 review citation

Mass Spectrometry-Based Structural Virology.
Wörner et al. (2021)
7 other articles

3 mentions without citation

Monomeric Intermediates Formed by Vesiculovirus Glycoprotein during Its Low-pH-induced Structural Transition.
Abou-Hamdan et al. (2018)
2 more