› 5mj0

X-ray diffraction
3.2Å resolution

Extracellular domain of human CD83 - cubic crystal form

Released:
DOI: 10.2210/pdb5mj0/pdb
PDB entry 5mj0 coloured by chain, front view.
PDB entry 5mj0 coloured by chain, side view.
PDB entry 5mj0 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystal Structure of the Extracellular Domain of the Human Dendritic Cell Surface Marker CD83.
Heilingloh CS, Klingl S, Egerer-Sieber C, Schmid B, Weiler S, Mühl-Zürbes P, Hofmann J, Stump JD, Sticht H, Kummer M, Steinkasserer A, Muller YA
J Mol Biol 429 1227-1243 (2017)
PMID: 28315353

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-169530 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
CD83 antigen Chains: A, B
Molecule details ›
Chains: A, B
Length: 116 amino acids
Theoretical weight: 12.77 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
UniProt:
  • Canonical: Q01151 (Residues: 18-18, 20-131; Coverage: 60%)
Gene name: CD83
Sequence domains: Immunoglobulin V-set domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.1
Spacegroup: I4132
Unit cell:
a: 149.564Å b: 149.564Å c: 149.564Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.239 0.237 0.264
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'

Quick links

Citations

3 review citations

The CD83 Molecule - An Important Immune Checkpoint.
Grosche et al. (2020)
2 more

1 mention without citation

Exploration of Key Immune-Related Transcriptomes Associated with Doxorubicin-Induced Cardiotoxicity in Patients with Breast Cancer.
Xiong et al. (2023)