› 5mrf

Electron Microscopy
4.97Å resolution

Structure of the yeast mitochondrial ribosome - Class C

Released:
DOI: 10.2210/pdb5mrf/pdb
PDB entry 5mrf coloured by chain, front view.
PDB entry 5mrf coloured by chain, side view.
PDB entry 5mrf coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
The structure of the yeast mitochondrial ribosome.
Desai N, Brown A, Amunts A, Ramakrishnan V
Science 355 528-531 (2017)
PMID: 28154081
Related structures: EMD-3553

Function and Biology Details

Reaction catalysed: 
3-hydroxy-2-methylpropanoyl-CoA + H(2)O = CoA + 3-hydroxy-2-methylpropanoate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 78-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126974 (preferred)
Entry contents:
75 distinct polypeptide molecules
3 distinct RNA molecules
Macromolecules (78 distinct):
Large ribosomal subunit protein uL2m Chain: B
Molecule details ›
Chain: B
Length: 393 amino acids
Theoretical weight: 43.87 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P32611 (Residues: 1-393; Coverage: 100%)
Gene names: RML2, SYGP-ORF37, YEL050C
Sequence domains:
Large ribosomal subunit protein uL3m Chain: C
Molecule details ›
Chain: C
Length: 249 amino acids
Theoretical weight: 27.53 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P31334 (Residues: 21-269; Coverage: 93%)
Gene names: G8520, MRPL9, YGR220C
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL4m Chain: D
Molecule details ›
Chain: D
Length: 252 amino acids
Theoretical weight: 28.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P51998 (Residues: 29-280; Coverage: 88%)
Gene names: YML025C, YML6
Sequence domains: Ribosomal protein L4/L1 family
Large ribosomal subunit protein uL5m Chain: E
Molecule details ›
Chain: E
Length: 274 amino acids
Theoretical weight: 31.01 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36519 (Residues: 19-292; Coverage: 94%)
Gene names: MRPL7, YD8419.04, YDR237W
Sequence domains:
Large ribosomal subunit protein uL6m Chain: F
Molecule details ›
Chain: F
Length: 196 amino acids
Theoretical weight: 21.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P32904 (Residues: 17-212; Coverage: 92%)
Gene names: MRPL6, YHR147C
Sequence domains: Ribosomal protein L6
Large ribosomal subunit protein bL9m Chain: G
Molecule details ›
Chain: G
Length: 74 amino acids
Theoretical weight: 8.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53724 (Residues: 10-83; Coverage: 53%)
Gene names: MRPL50, N3220, YNR022C
Large ribosomal subunit protein uL13m Chain: H
Molecule details ›
Chain: H
Length: 160 amino acids
Theoretical weight: 18.13 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q12487 (Residues: 2-161; Coverage: 98%)
Gene names: MRPL23, O3530, YOR150W
Sequence domains: Ribosomal protein L13
Large ribosomal subunit protein uL14m Chain: I
Molecule details ›
Chain: I
Length: 138 amino acids
Theoretical weight: 14.93 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P35996 (Residues: 1-138; Coverage: 100%)
Gene names: MRPL34, MRPL38, YKL170W, YKL634
Sequence domains: Ribosomal protein L14p/L23e
Large ribosomal subunit protein uL15m Chain: J
Molecule details ›
Chain: J
Length: 220 amino acids
Theoretical weight: 24.77 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36520 (Residues: 58-277; Coverage: 68%)
Gene names: MRPL10, MRPL18, N0580, YNL284C
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein uL16m Chain: K
Molecule details ›
Chain: K
Length: 195 amino acids
Theoretical weight: 22.35 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38064 (Residues: 38-232; Coverage: 84%)
Gene names: MRPL16, RML16, YBL038W, YBL0411
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein bL17m Chain: L
Molecule details ›
Chain: L
Length: 237 amino acids
Theoretical weight: 26.86 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P22353 (Residues: 2-238; Coverage: 100%)
Gene names: HRD238, J1125, MRPL8, YJL063C
Sequence domains:
Large ribosomal subunit protein bL19m Chain: M
Molecule details ›
Chain: M
Length: 151 amino acids
Theoretical weight: 17.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P25626 (Residues: 16-166; Coverage: 89%)
Gene names: IMG1, PETCR46, YCR046C, YCR46C
Sequence domains: Ribosomal protein L19
Large ribosomal subunit protein bL21m Chain: N
Molecule details ›
Chain: N
Length: 118 amino acids
Theoretical weight: 13.51 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P40858 (Residues: 44-161; Coverage: 73%)
Gene names: J0904, MRPL49, YJL096W
Sequence domains: Ribosomal prokaryotic L21 protein
Large ribosomal subunit protein uL22m Chain: O
Molecule details ›
Chain: O
Length: 225 amino acids
Theoretical weight: 25.96 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53881 (Residues: 85-309; Coverage: 73%)
Gene names: MRPL22, N1657, YNL177C
Sequence domains: Ribosomal protein L22p/L17e
Large ribosomal subunit protein uL23m Chain: P
Molecule details ›
Chain: P
Length: 207 amino acids
Theoretical weight: 24.53 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P32387 (Residues: 55-261; Coverage: 79%)
Gene names: D9509.23, MRP20, MRPL41, YDR405W
Sequence domains: Ribosomal protein L23
Large ribosomal subunit protein uL24m Chain: Q
Molecule details ›
Chain: Q
Length: 296 amino acids
Theoretical weight: 33.68 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36534 (Residues: 2-297; Coverage: 100%)
Gene names: MRPL40, YPL173W
Large ribosomal subunit protein bL27m Chain: R
Molecule details ›
Chain: R
Length: 337 amino acids
Theoretical weight: 39.52 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P12687 (Residues: 35-371; Coverage: 91%)
Gene names: MRP7, MRPL2, N2007, YNL005C
Sequence domains:
Large ribosomal subunit protein bL28m Chain: S
Molecule details ›
Chain: S
Length: 216 amino acids
Theoretical weight: 25.19 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36525 (Residues: 22-237; Coverage: 84%)
Gene names: MRPL14, MRPL24, YM9646.05, YMR193W
Sequence domains: Ribosomal L28 family
Large ribosomal subunit protein uL29m Chain: T
Molecule details ›
Chain: T
Length: 225 amino acids
Theoretical weight: 26.41 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36517 (Residues: 15-239; Coverage: 71%)
Gene names: L9753.1, MRPL4, YLR439W
Sequence domains: Mitochondrial 39-S ribosomal protein L47 (MRP-L47)
Large ribosomal subunit protein uL30m Chain: U
Molecule details ›
Chain: U
Length: 82 amino acids
Theoretical weight: 9.09 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P20084 (Residues: 2-83; Coverage: 95%)
Gene names: MRPL33, YM8021.12, YMR286W
Sequence domains: Ribosomal protein L30p/L7e
Large ribosomal subunit protein bL31m Chain: V
Molecule details ›
Chain: V
Length: 177 amino acids
Theoretical weight: 20.13 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36531 (Residues: 1-177; Coverage: 100%)
Gene names: MRPL36, YBR0918, YBR122C
Sequence domains: Ribosomal protein L31p, N-terminal
Large ribosomal subunit protein bL32m Chain: W
Molecule details ›
Chain: W
Length: 112 amino acids
Theoretical weight: 13.41 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P25348 (Residues: 72-183; Coverage: 61%)
Gene names: MRPL32, YCR003W, YCR041, YCR3W
Sequence domains: Ribosomal L32p protein family
Large ribosomal subunit protein bL33m Chain: X
Molecule details ›
Chain: X
Length: 64 amino acids
Theoretical weight: 7.28 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36533 (Residues: 6-69; Coverage: 91%)
Gene names: MRPL39, YM9571.09C, YML009C
Large ribosomal subunit protein bL34m Chain: Y
Molecule details ›
Chain: Y
Length: 46 amino acids
Theoretical weight: 5.47 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q04598 (Residues: 60-105; Coverage: 44%)
Gene names: YD9727.10, YDR115W
Sequence domains: Ribosomal protein L34
Large ribosomal subunit protein bL35m Chain: Z
Molecule details ›
Chain: Z
Length: 62 amino acids
Theoretical weight: 7.21 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53921 (Residues: 54-115; Coverage: 54%)
Gene names: MRP35, N1901, YNL122C
Sequence domains: Ribosomal protein L35
Large ribosomal subunit protein bL36m Chain: 0
Molecule details ›
Chain: 0
Length: 38 amino acids
Theoretical weight: 4.65 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: O14464 (Residues: 56-93; Coverage: 41%)
Gene names: RTC6, TAE4, YPL183BW, YPL183W-A
Sequence domains: Ribosomal protein L36
Large ribosomal subunit protein mL38 Chain: 1
Molecule details ›
Chain: 1
Length: 348 amino acids
Theoretical weight: 40.7 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q06678 (Residues: 20-367; Coverage: 95%)
Gene names: D9798.5, MRPL35, YDR322W
Sequence domains: Phosphatidylethanolamine-binding protein
Large ribosomal subunit protein mL40 Chain: 2
Molecule details ›
Chain: 2
Length: 113 amino acids
Theoretical weight: 13.46 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36527 (Residues: 34-146; Coverage: 77%)
Gene names: D8035.6, MRPL28, YDR462W
Sequence domains: Mitochondrial ribosomal protein L28
Large ribosomal subunit protein mL41 Chain: 3
Molecule details ›
Chain: 3
Length: 130 amino acids
Theoretical weight: 14.84 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36526 (Residues: 17-146; Coverage: 89%)
Gene names: MRPL27, YBR2019, YBR282W
Sequence domains: Mitochondrial ribosomal protein L27
Large ribosomal subunit protein mL43 Chain: 4
Molecule details ›
Chain: 4
Length: 138 amino acids
Theoretical weight: 15.91 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q06090 (Residues: 2-139; Coverage: 99%)
Gene names: MRPL51, P8283.12, YPR100W
Sequence domains: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Large ribosomal subunit protein mL44 Chain: 5
Molecule details ›
Chain: 5
Length: 324 amino acids
Theoretical weight: 36.33 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36516 (Residues: 67-390; Coverage: 83%)
Gene names: MRPL3, YM9711.14, YMR024W
Sequence domains:
Large ribosomal subunit protein mL46 Chain: 6
Molecule details ›
Chain: 6
Length: 281 amino acids
Theoretical weight: 32.26 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36528 (Residues: 1-281; Coverage: 100%)
Gene names: MRPL17, MRPL30, N0864, YNL252C
Sequence domains: 39S mitochondrial ribosomal protein L46
Large ribosomal subunit protein mL49 Chain: 7
Molecule details ›
Chain: 7
Length: 106 amino acids
Theoretical weight: 12.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P25642 (Residues: 41-146; Coverage: 73%)
Gene names: IMG2, YCR071C, YCR71C
Sequence domains: Mitochondrial large subunit ribosomal protein (Img2)
Large ribosomal subunit protein mL50 Chain: 8
Molecule details ›
Chain: 8
Length: 264 amino acids
Theoretical weight: 30.32 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02204 (Residues: 1-264; Coverage: 100%)
Gene names: MRPL13, YK105, YKR006C
Sequence domains: Ribosomal subunit 39S
Large ribosomal subunit protein mL57 Chain: 9
Molecule details ›
Chain: 9
Length: 215 amino acids
Theoretical weight: 23.82 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P36523 (Residues: 29-243; Coverage: 85%)
Gene names: MRPL15, YLR312BW, YLR312W-A
Sequence domains: Ribonuclease III domain
Large ribosomal subunit protein mL58 Chain: a
Molecule details ›
Chain: a
Length: 177 amino acids
Theoretical weight: 20.51 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P22354 (Residues: 19-195; Coverage: 91%)
Gene names: MRPL20, YKR085C, YKR405
Sequence domains: Mitochondrial ribosomal protein subunit L20
Large ribosomal subunit protein mL59 Chain: b
Molecule details ›
Chain: b
Length: 155 amino acids
Theoretical weight: 18.41 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P23369 (Residues: 3-157; Coverage: 99%)
Gene names: MRPL25, YGR076C, YMR26
Sequence domains: Mitochondrial ribosomal protein mL59
Large ribosomal subunit protein mL60 Chain: c
Molecule details ›
Chain: c
Length: 119 amino acids
Theoretical weight: 14.28 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P14063 (Residues: 13-131; Coverage: 91%)
Gene names: MRPL31, YKL138C
Sequence domains: Mitochondrial ribosomal protein L31
Large ribosomal subunit protein mL67 Chain: d
Molecule details ›
Chain: d
Length: 215 amino acids
Theoretical weight: 25.71 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q06630 (Residues: 1-215; Coverage: 95%)
Gene names: MHR1, XTC1, YDR296W
Sequence domains: Transcriptional regulation of mitochondrial recombination
Small ribosomal subunit protein bS1m Chain: AA
Molecule details ›
Chain: AA
Length: 344 amino acids
Theoretical weight: 39.51 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02950 (Residues: 1-344; Coverage: 100%)
Gene names: MRP51, YPL118W
Sequence domains: Mitochondrial ribosomal protein subunit
Small ribosomal subunit protein uS2m Chain: BB
Molecule details ›
Chain: BB
Length: 266 amino acids
Theoretical weight: 29.59 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P32902 (Residues: 128-393; Coverage: 68%)
Gene names: MRP4, MRP4A, YHL004W
Sequence domains: Ribosomal protein S2
Small ribosomal subunit protein uS3m Chain: CC
Molecule details ›
Chain: CC
Length: 398 amino acids
Theoretical weight: 47.17 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P02381 (Residues: 1-398; Coverage: 100%)
Gene names: Q0140, VAR1
Sequence domains: Mitochondrial ribosomal protein (VAR1)
Small ribosomal subunit protein uS4m Chain: DD
Molecule details ›
Chain: DD
Length: 486 amino acids
Theoretical weight: 56.45 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P27929 (Residues: 1-486; Coverage: 100%)
Gene names: MNA6, N1211, N1840, NAM9, YNL137C
Sequence domains: S4 domain
Small ribosomal subunit protein uS5m Chain: EE
Molecule details ›
Chain: EE
Length: 293 amino acids
Theoretical weight: 33.24 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P33759 (Residues: 14-306; Coverage: 95%)
Gene names: MRPS5, YBR1704, YBR251W
Sequence domains:
Small ribosomal subunit protein bS6m Chain: FF
Molecule details ›
Chain: FF
Length: 125 amino acids
Theoretical weight: 14.31 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P28778 (Residues: 1-125; Coverage: 95%)
Gene names: MRP17, YKL003C
Sequence domains: Ribosomal protein S6
Small ribosomal subunit protein uS7m Chain: GG
Molecule details ›
Chain: GG
Length: 161 amino acids
Theoretical weight: 18.27 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P47150 (Residues: 87-247; Coverage: 65%)
Gene names: J2020, RSM7, YJR113C
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein uS8m Chain: HH
Molecule details ›
Chain: HH
Length: 154 amino acids
Theoretical weight: 17.37 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q03799 (Residues: 2-155; Coverage: 99%)
Gene names: MRPS8, YM8520.07, YMR158W
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein uS9m Chain: II
Molecule details ›
Chain: II
Length: 244 amino acids
Theoretical weight: 27.96 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38120 (Residues: 35-278; Coverage: 88%)
Gene names: MRPS9, YBR1123, YBR146W
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein uS10m Chain: JJ
Molecule details ›
Chain: JJ
Length: 186 amino acids
Theoretical weight: 21.4 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q03201 (Residues: 16-201; Coverage: 92%)
Gene names: RSM10, YD6888.03, YDR041W
Sequence domains: Ribosomal protein S10p/S20e
Small ribosomal subunit protein uS11m Chain: KK
Molecule details ›
Chain: KK
Length: 148 amino acids
Theoretical weight: 16.72 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P42847 (Residues: 70-217; Coverage: 68%)
Gene names: MRPS18, N0397, YNL306W
Small ribosomal subunit protein uS12m Chain: LL
Molecule details ›
Chain: LL
Length: 124 amino acids
Theoretical weight: 13.55 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53732 (Residues: 29-152; Coverage: 81%)
Gene names: MRPS12, N3298, YNR036C
Sequence domains: Ribosomal protein S12/S23
Small ribosomal subunit protein uS13m Chain: MM
Molecule details ›
Chain: MM
Length: 120 amino acids
Theoretical weight: 13.47 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53937 (Residues: 2-121; Coverage: 84%)
Gene names: N2322, SWS2, YNL081C
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein uS14m Chain: NN
Molecule details ›
Chain: NN
Length: 115 amino acids
Theoretical weight: 13.56 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P10663 (Residues: 1-115; Coverage: 100%)
Gene names: MRP2, P9325.7, YPR166C
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein uS15m Chain: OO
Molecule details ›
Chain: OO
Length: 253 amino acids
Theoretical weight: 29.52 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P21771 (Residues: 34-286; Coverage: 89%)
Gene names: D9651.3, MRPS28, YDR337W
Sequence domains: Ribosomal protein S15
Small ribosomal subunit protein bS16m Chain: PP
Molecule details ›
Chain: PP
Length: 119 amino acids
Theoretical weight: 13.4 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q02608 (Residues: 2-120; Coverage: 98%)
Gene names: LPA4C, MRPS16, YPL013C
Sequence domains: Ribosomal protein S16
Small ribosomal subunit protein uS17m Chain: QQ
Molecule details ›
Chain: QQ
Length: 237 amino acids
Theoretical weight: 27.68 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q03246 (Residues: 1-237; Coverage: 100%)
Gene names: MRPS17, YM8010.18C, YMR188C
Sequence domains: Ribosomal protein S17
Small ribosomal subunit protein bS18m Chain: RR
Molecule details ›
Chain: RR
Length: 99 amino acids
Theoretical weight: 11.45 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P40033 (Residues: 40-138; Coverage: 72%)
Gene names: RSM18, YER050C
Sequence domains: Ribosomal protein S18
Small ribosomal subunit protein uS19m Chain: SS
Molecule details ›
Chain: SS
Length: 80 amino acids
Theoretical weight: 9.04 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53733 (Residues: 9-88; Coverage: 88%)
Gene names: N3300, RSM19, YNR037C
Sequence domains: Ribosomal protein S19
Small ribosomal subunit protein bS21m Chain: TT
Molecule details ›
Chain: TT
Length: 92 amino acids
Theoretical weight: 10.87 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38175 (Residues: 86-177; Coverage: 52%)
Gene names: MRP21, MRP50, YBL0702, YBL090W
Sequence domains: Ribosomal protein S21
Small ribosomal subunit protein mS23 Chain: UU
Molecule details ›
Chain: UU
Length: 233 amino acids
Theoretical weight: 27.1 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P40496 (Residues: 1-233; Coverage: 88%)
Gene names: RSM25, YIL093C
Sequence domains: Mitochondrial ribosomal protein S25
Small ribosomal subunit protein mS26 Chain: VV
Molecule details ›
Chain: VV
Length: 233 amino acids
Theoretical weight: 26.74 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P17558 (Residues: 2-234; Coverage: 73%)
Gene names: PET123, YOR158W
Small ribosomal subunit protein mS29 Chain: WW
Molecule details ›
Chain: WW
Length: 401 amino acids
Theoretical weight: 45.65 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q01163 (Residues: 50-450; Coverage: 89%)
Gene names: G2856, RSM23, YGL129C
Sequence domains: Mitochondrial ribosomal death-associated protein 3
Small ribosomal subunit protein mS33 Chain: XX
Molecule details ›
Chain: XX
Length: 96 amino acids
Theoretical weight: 11.03 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53305 (Residues: 1-96; Coverage: 87%)
Gene names: RSM27, YGR215W
Sequence domains: Mitochondrial ribosomal subunit S27
Small ribosomal subunit protein mS35 Chain: YY
Molecule details ›
Chain: YY
Length: 273 amino acids
Theoretical weight: 32.33 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q03976 (Residues: 47-319; Coverage: 86%)
Gene names: RSM24, YDR175C
Sequence domains: Mitochondrial ribosomal subunit protein
Small ribosomal subunit protein mS37 Chain: ZZ
Molecule details ›
Chain: ZZ
Length: 91 amino acids
Theoretical weight: 10.31 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: O75012 (Residues: 5-95; Coverage: 96%)
Gene names: MRP10, YDL045W-A
Sequence domains: CHCH domain
Small ribosomal subunit protein mS38 Chain: 11
Molecule details ›
Chain: 11
Length: 34 amino acids
Theoretical weight: 4.38 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P32344 (Residues: 78-111; Coverage: 31%)
Gene names: COX24, QRI5, YLR204W
Sequence domains: Mitochondrial mRNA-processing protein COX24, C-terminal
Small ribosomal subunit protein mS41 Chain: 22
Molecule details ›
Chain: 22
Length: 99 amino acids
Theoretical weight: 11.8 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P38783 (Residues: 30-128; Coverage: 76%)
Gene names: FYV4, YHR059W
Sequence domains: IGR protein motif
Small ribosomal subunit protein mS42 Chain: 33
Molecule details ›
Chain: 33
Length: 255 amino acids
Theoretical weight: 29.04 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P47141 (Residues: 8-262; Coverage: 96%)
Gene names: J1952, RSM26, YJR101W
Sequence domains: Iron/manganese superoxide dismutases, C-terminal domain
Small ribosomal subunit protein mS43 Chain: 44
Molecule details ›
Chain: 44
Length: 321 amino acids
Theoretical weight: 36.78 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P10662 (Residues: 1-321; Coverage: 100%)
Gene names: D9651.1, MRP1, YDR347W
Small ribosomal subunit protein mS27 Chain: 55
Molecule details ›
Chain: 55
Length: 339 amino acids
Theoretical weight: 39.05 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P12686 (Residues: 1-339; Coverage: 100%)
Gene names: MRP13, YGR084C
Small ribosomal subunit protein mS45 Chain: 66
Molecule details ›
Chain: 66
Length: 319 amino acids
Theoretical weight: 36.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P53292 (Residues: 27-345; Coverage: 93%)
Gene names: MRPS35, YGR165W
Sequence domains: Eukaryotic mitochondrial regulator protein
Small ribosomal subunit protein mS46 Chain: 77
Molecule details ›
Chain: 77
Length: 165 amino acids
Theoretical weight: 18.9 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q03430 (Residues: 197-361; Coverage: 46%)
Gene names: RSM28, YDR494W
Small ribosomal subunit protein mS47 Chain: 88
Molecule details ›
Chain: 88
Length: 457 amino acids
Theoretical weight: 51.37 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P28817 (Residues: 36-492; Coverage: 91%)
Gene names: EHD3, MRP5, YD9673.08C, YDR036C
Sequence domains: Enoyl-CoA hydratase/isomerase
unknown protein sequence 1 Chain: cc
Molecule details ›
Chain: cc
Length: 94 amino acids
Theoretical weight: 8.02 KDa
Source organism: Saccharomyces cerevisiae
unknown protein sequence 2 Chain: dd
Molecule details ›
Chain: dd
Length: 151 amino acids
Theoretical weight: 12.87 KDa
Source organism: Saccharomyces cerevisiae
21S ribosomal RNA Chain: A
Molecule details ›
Chain: A
Length: 3296 nucleotides
Theoretical weight: 1057.79 KDa
Sequence domains: Bacterial large subunit ribosomal RNA
15S ribosomal RNA Chain: aa
Molecule details ›
Chain: aa
Length: 1649 nucleotides
Theoretical weight: 528.78 KDa
Sequence domains: Bacterial small subunit ribosomal RNA
tRNA Chain: bb
Molecule details ›
Chain: bb
Length: 76 nucleotides
Theoretical weight: 24.42 KDa
Sequence domains: tRNA

Ligands and Environments

4 bound ligands:
Ligand MG 299 x MG
Ligand NA 1 x NA
Ligand ZN 2 x ZN
Ligand GDP 1 x GDP
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.97Å
Relevant EMDB volumes: EMD-3553

Quick links

Citations

20 review citations

Does functional specialization of ribosomes really exist?
Ferretti et al. (2019)
19 more

3 mentions without citation

The structure of the yeast mitochondrial ribosome.
Desai et al. (2017)
2 more