› 5mrx

X-ray diffraction
0.85Å resolution

27-nt SRL with a 5-hydroxymethyl cytidine modification

Released:
DOI: 10.2210/pdb5mrx/pdb
PDB entry 5mrx coloured by chain, front view.
PDB entry 5mrx coloured by chain, side view.
PDB entry 5mrx coloured by chain, top view.
Source organism: Escherichia coli
Primary publication:
Synthesis, Thermodynamic Properties, and Crystal Structure of RNA Oligonucleotides Containing 5-Hydroxymethylcytosine
Riml C, Lusser A, Ennifar E, Micura R
J. Org. Chem. (2017)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196956 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (27-MER) Chain: A
Molecule details ›
Chain: A
Length: 27 nucleotides
Theoretical weight: 8.77 KDa
Source organism: Escherichia coli
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand 5HM 1 x 5HM

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P43
Unit cell:
a: 29.51Å b: 29.51Å c: 76.8Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.159 0.145 0.168
Expression system: Not provided

Quick links

Citations

5 citation in other articles

Pre-mRNA modifications and their role in nuclear processing.
Martinez et al. (2018)
4 more